Thank you Shane for your comment.
When I tried importing my buildings raster (polygons raised by 0.1m than my average DTM elevations) in HECRAS giving it as a top priority and my DTM as second; though the error has vanished and even I’m able to import it, I still have those 0 (zero) values everywhere other than the buildings which I had expected.
So my question is, is it good to stamp my buildings raster on DTM to generate a new DTM in any GIS tool and then importing it back to HECRAS, or am I missing some process while generating terrain?
Regards.