Chris,
How many cross sections are we talking here? Something similar I have done is change XS’s with the “interpolate line” tool which is apart of 3D analyst in ArcMap draw a line directly over my GeoRAS created XS cut line plot the profile (another tool in 3D analyst) export that data, then exchange the station-elevation data in RAS with my copied excel data.
If that makes any sense or seems appropriate I can walk you through it in a little more detailed fashion, otherwise all I can think of to help is “copy current cross section” function in the Cross Section Data.
Good luck