Again, I must say that it is not possible for me to give a definite answer for your case without knowing the details of your project. It really depends on where the water goes when it spills over your levees. For example, does the water travel in a separate path and rejoin the main channel downstream? If so, then you may need to model it as a separate channel with split flow optimization and use lateral structures wherever you suspect water will spill back and forth between the 2 channels.
To be honest, I have never used levees in the final version of a model. In my experience, the main benefit of using levees instead of lateral structures is that they are quick and easy, whereas lateral structures take more time and effort. The other scenario where levees may be preferred is if you are designing a levee that is meant to completely contain flood waters, and you need a quick way to modify your model to try different options.
If you would rather not post some kind of project layout here, perhaps it would be better to discuss via email.