Hi Brian. I am working on a project that requires modeling quite a few bridges in 2D. I believe I am also experiencing the same anomaly as you are.
The WSE is well below the low chord and its completely an open channel flow. There is an exagerrated drop in WSE (HW and TW) at the Bridge 2D Connection CL. For me, this exegerration becomes a little okay when the flows become large but for low flows, the profile is very weird. When I remove the bridge and run the 2D, the WSE does not has that drawdown (which is logically correct). I have modelled this bridge in 1D also and for that, I do not have that weird drop but inputting bridges in 2D behaves abnormally. After reading your post, i am also checking the Bald Eagle Creek example.
Are you able to figure out this bridge problem?
Thank you.
Nayyar