Actually there is a more stable approach to this. I will try and explain but if you want a graphic let me know because i do not know how to upload pics on this new site version.
Main reach will have 2 xs US crossing-1 and 2 xs DS and that reach will continue DS with no break or junction.
Trib Reach will have 2 XS US crossing-2 and ends in a 1D SA.
On the main reach connect the trib SA to the main reach via a lateral structure. This lateral structure will have the crossing -2 culvert data in it.