The issue is not the DS xsections it is the upstream xsections. The orientation of them looks very off. Provide an image of the model zoomed out more to see the upstream cross sections as well as the other cross sections where this problem is assumed.
When running a !d simulation and correlating this to a graphical output in the inundation modeling, the modeler must understand that the image displayed is only as good as its mathematical input. You can orient a cross section any way you want as long is its left to right looking downstream, the results are still only as good as the numerical input. Its solving equations based on your numerical input not the orientation of your cross section in plan view