If you are doing this in 1D, you might want to consider 2D if you have terrain and the time. Although this would be trickier for a new RAS user.
Without knowing more about your particular problem, it is hard to say too much. If your culverts start in one reach and end in a different reach, you may be able to do that using a lateral structure.
It might also be possible to model your culverts as a normal cross section with a lid using the Preissmann slot option.